Regulatome of maize SAM related HomeoBox genes
--cite--
Luo, Z., Wu L., Miao, X., Zhang, S., Wei, N., Zhao, S., … & Li, L.. Dynamic regulatome of shoot apical meristem related HomeoBox genes modulates plant architecture of maize. (Submitted).
--additional files--
Additional file1 - An integrated network of maize SAM related HomeoBox genes by tsCUT&Tag, co-expression and co-translation.
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Additional file2 - SAM dynamic network of maize SAM related HomeoBox genes
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Additional file3 - Transcriptome GRN predicted by gene expression level
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Additional file4 - Translatome GRN predicted by gene translational level
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Additional file5 - Open chromatin regions and annotation of ATAC-seq
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Additional file6 - Genomic binding peaks and annotation of TFs by tsCUT&Tag
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Gene regulatory networks (GRN)
--cite--
Zhu, W., Miao, X., Qian, J., … & Li, L. (2023). A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize. Genome Biology.
Gene regulatory networks (GRN)
--additional files--
Additional file13: Merged regulatory pairs predicted by union GRN
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Additional file14: Predicted regulatory pairs of high-confidence GRN
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Additional file15: Predicted sub-GRN likely occurred in endosperm
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Additional file16: Predicted sub-GRN likely occurred in leaf
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Additional file17: Predicted sub-GRN likely occurred in root
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Additional file18: Predicted sub-GRN likely occurred in SAM-embryo
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The constructed GRN based on the mean values of rep1 and rep2.